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At the time of this check-in, this directory has two disjointed types of files. The intrepid.py file which was an initial port to run intrepid on Ohana. It is unknown if that was finished. Additional svn logs against intrepid.p should shed more light on the situation. The second file is the quick script used to run intrepid on manuscripts. This is an initial port of the command line pipeline so that we can run intrepid on different given manuscripts. This script assumes that you first change directory to the manuscript before the command is executed.