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Generated 14-Nov-2016 07:47:02 using cpu time.

Function NameCallsTotal TimeSelf Time*Total Time Plot
(dark band = self time)
processing31838.931 s0.010 s
analyze_SNPs_hapmap1838.921 s0.010 s
allelic_ratios_WGseq1792.304 s631.418 s
fgetl4716187154.294 s154.294 s
LOH_hapmap_v4146.607 s13.577 s
saveas622.638 s0.040 s
print622.547 s0.000 s
graphics/private/alternatePrintPath622.467 s3.024 s
...vate/alternatePrintPath>printSetup610.845 s0.121 s
calculate_allelic_ratio_cutoffs16.995 s2.520 s
...PrintPath>LocalSetupContentChanges65.896 s0.131 s
onCleanup>onCleanup.delete3115.352 s0.010 s
...te/alternatePrintPath>printCleanup65.282 s0.050 s
...tePrintPath>@()printCleanup(pj,pt)65.282 s0.000 s
graphics/private/adjustbackground125.271 s4.616 s
graphics/private/modifyColorsForPrint125.271 s0.000 s
FindGaussianCutoffs_3124.445 s0.020 s
fminsearch264.294 s1.290 s
smoothhist2D_4_Xcorrected164.143 s3.608 s
...rintPath>LocalInvertColorsIfNeeded63.981 s0.040 s
...ePrintPath>LocalGenerateFileOutput63.094 s0.081 s
...ivate/alternatePrintPath>doCleanup63.094 s0.544 s
fit_Gaussian_model_disomy_293.034 s0.020 s
fminsearch>checkfun209422.983 s0.323 s
...rnatePrintPath>LocalUpdatePosition62.863 s2.318 s
...atePrintPath>LocalSetPaintDisabled122.711 s1.734 s
findall1412.611 s2.490 s
newplot66292.590 s0.947 s
...th>LocalCallgenerateGraphicsOutput62.580 s2.510 s
...intPath>LocalRestoreContentChanges62.086 s0.192 s
fit_Gaussian_model_disomy_2>fiterror147171.895 s1.895 s
...rintPath>LocalGenerateRasterOutput31.824 s0.000 s
...gt;LocalRestoreInvertedColorsIfNeeded61.330 s0.000 s
graphics/private/fireprintbehavior121.270 s0.010 s
ishold66131.109 s1.109 s
newplot>ObserveAxesNextPlot66291.089 s1.089 s
fit_Gaussian_model_trisomy_221.058 s0.010 s
angle_plot_subfigures80.947 s0.232 s
...rintPath>LocalGenerateVectorOutput30.756 s0.000 s
...inerFactory$FigurePanelContainerLight (Java method)120.726 s0.726 s
fit_Gaussian_model_trisomy_2>fiterror40500.685 s0.685 s
...ternatePrintPath>LocalUpdateViewer60.645 s0.625 s
newplot>ObserveFigureNextPlot66290.554 s0.554 s
...rnatePrintPath>LocalUpdateRenderer60.514 s0.010 s
smoothhist2D_4_Xcorrected>smooth1D320.514 s0.514 s
FindChrSizes_410.464 s0.151 s
autoSwitchToPaintersForPrint60.464 s0.010 s
...natePrintPath>LocalRestoreOldProps60.464 s0.413 s
Area.doUpdate1110.443 s0.060 s
area370.423 s0.010 s
graphics/private/writeRaster30.413 s0.010 s
...rnatePrintPath>LocalPollUntilReady60.403 s0.272 s
specgraph/...te/areaHGUsingMATLABClasses370.393 s0.010 s
specgraph/private/areaHelper1850.343 s0.020 s
imwrite30.343 s0.010 s
specgraphhelper1480.333 s0.000 s
...ate/areaHelper>localGenerateStrips1110.323 s0.323 s
imagesci/private/writepng30.323 s0.010 s
Area.Area>Area.Area370.282 s0.081 s
title180.272 s0.262 s
imagesci/private/pngwritec (MEX-file)30.272 s0.272 s
fit_Gaussian_model2140.262 s0.010 s
FindHighestGaussian_2120.262 s0.262 s
...intPath>LocalUpdateOpenGLLineWidth60.262 s0.141 s
...atePrintPath>LocalGetJavaContainer240.252 s0.252 s
allchild1560.252 s0.192 s
graph2d/...e/subplotHGUsingMATLABClasses440.242 s0.202 s
subplot440.242 s0.000 s
num2str6230.232 s0.101 s
graphics/private/adjustGridLineStyles120.212 s0.020 s
Load_genome_information20.171 s0.121 s
Area.Area>Area.doGetBaselineAxis46250.131 s0.131 s
...ernatePrintPath>LocalIsSizeUpdated60.131 s0.010 s
...rnatePrintPath>LocalIsShowDisabled60.121 s0.000 s
int2str4770.111 s0.111 s
addpath20.111 s0.000 s
...rintPath>LocalRemoveSelectionState60.111 s0.040 s
path20.101 s0.050 s
ctorHelper370.101 s0.020 s
...;1).*(x*(scaleFactor))+(x>=1).*(x)67440.091 s0.091 s
optimset260.081 s0.020 s
graphics/private/setGraphicsProperty9480.081 s0.081 s
fit_Gaussian_model_monosomy_210.071 s0.010 s
graphics/private/modifyUnitsForPrint120.071 s0.000 s
hold960.060 s0.040 s
Area.getXYZDataExtents1480.060 s0.010 s
...intPath>LocalRestoreSelectionState60.060 s0.060 s
...tPath>LocalUpdatePrintJobForOutput60.060 s0.060 s
timefun/private/formatdate90.060 s0.040 s
timefun/private/dateformverify90.060 s0.000 s
graphics/private/imwriteArgsForPrint30.060 s0.010 s
graphics/private/postProcessPrinttables180.050 s0.020 s
mdbfileonpath10.050 s-0.000 s
general/private/parsedirs40.050 s0.050 s
cell.strmatch870.050 s0.010 s
fit_Gaussian_model2>fiterror19570.050 s0.050 s
Area.Area>Area.set.EdgeColor370.050 s0.020 s
printtables180.050 s0.000 s
graphics/private/getDeprecatedDeviceList240.050 s0.050 s
onCleanup>onCleanup.onCleanup3110.050 s0.050 s
...>showHiddenHandlesToFindAllHandles1410.050 s0.030 s
cell.setdiff60.050 s0.020 s
datestr60.050 s0.000 s
hist520.040 s0.030 s
axescheck1850.040 s0.040 s
strmatch870.040 s0.040 s
...tHGUsingMATLABClasses>datasiblings440.040 s0.040 s
Area.Area>Area.get.Edge4070.040 s0.040 s
Area.Area>Area.get.YCoords2590.040 s0.040 s
graphics/private/inputcheck60.040 s0.010 s
Area.getColorAlphaDataExtents1480.040 s0.020 s
...set(rootobj,'ShowHiddenHandles',Temp)1410.040 s0.040 s
...odifyUnitsForPrint>getObjWithUnits60.040 s0.000 s
graphics/private/name60.030 s0.020 s
mdbfileonpath>checkIfShadowed10.030 s0.010 s
phased_and_unphased_color_definitions10.030 s0.030 s
fit_Gaussian_model_monosomy_2>fiterror2180.030 s0.030 s
repmat1150.030 s0.020 s
Area.Area>Area.set.LineWidth_I740.030 s0.020 s
Area.Area>Area.set.EdgeColor_I370.030 s0.010 s
Area.Area>Area.get.CCoords2590.030 s0.020 s
...tPath>LocalIsPaperPositionModeAuto120.030 s0.030 s
...rnatePrintPath>LocalFindContainers120.030 s0.010 s
Area.Area>Area.set.LineWidth740.030 s0.000 s
cell.setdiff>cellsetdiffR2012a60.030 s0.010 s
...tePrintPath>LocalUpdateContainsTex60.030 s0.030 s
fileparts270.020 s0.020 s
num2str>handleNumericPrecision1520.020 s0.000 s
num2str>convertUsingRecycledSprintf1520.020 s0.020 s
str2double1440.020 s0.020 s
parseplotapi370.020 s0.000 s
optimget2080.020 s0.000 s
optimget>optimgetfast2080.020 s0.020 s
mode20.020 s0.020 s
Area.Area>Area.set.Face_I370.020 s0.020 s
Area.Area>Area.set.Edge_I370.020 s0.020 s
Area.Area>Area.doSetup370.020 s0.020 s
Area.Area>Area.get.EdgeColor_I1480.020 s0.020 s
Area.Area>Area.get.XCoords2590.020 s0.010 s
printjob120.020 s0.000 s
mlprintjob>mlprintjob.mlprintjob120.020 s0.020 s
...nputcheck>LocalCheckForDeprecation120.020 s0.000 s
arraytolimits4440.020 s0.020 s
...set(rootobj,'ShowHiddenHandles',Temp)1410.020 s0.020 s
...set(rootobj,'ShowHiddenHandles',Temp)1560.020 s0.020 s
datevec30.020 s0.000 s
datenum90.020 s0.000 s
...rnatePrintPath>LocalHandleNoUIFlag120.020 s0.020 s
cell.unique120.020 s0.000 s
cell.unique>celluniqueR2012a120.020 s0.020 s
...rnatePrintPath>LocalHasSceneViewer120.020 s0.020 s
num2cell30.020 s0.020 s
...natePrintPath>LocalWarnIfScalingUI60.020 s0.020 s
cnv2icudf150.020 s0.020 s
datevec>getformat30.020 s0.010 s
imagesci/private/writepng>parseInputs30.020 s0.000 s
colormap160.020 s0.020 s
mdbfileonpath>filepartsWithoutPackages20.010 s0.000 s
mdbfileonpath>isFileInPackage10.010 s0.000 s
mdbfileonpath>getFileToRun10.010 s0.000 s
fullfile110.010 s0.010 s
mdbfileonpath>removePackageDirs20.010 s0.000 s
strcat20.010 s0.010 s
general/private/catdirs20.010 s0.010 s
optimset>checkfield780.010 s0.010 s
Load_size_info20.010 s0.010 s
ylim440.010 s0.010 s
graph2d/private/labelcheck180.010 s0.010 s
...vate/usev6plotapiHGUsingMATLABClasses370.010 s0.010 s
specgraph/private/getRealData370.010 s0.010 s
repmat>create@(x)double(full(x))1150.010 s0.010 s
Area.Area>Area.get.Face2220.010 s0.000 s
Area.Area>Area.get.Face_I2590.010 s0.010 s
Area.Area>Area.get.LineStyle370.010 s0.000 s
Area.Area>Area.get.LineStyle_I370.010 s0.010 s
...@(obj,evd)(hObj.sendDataChangedEvent)1480.010 s0.010 s
Area.Area>Area.set.FaceColor370.010 s0.000 s
Area.Area>Area.set.FaceColor_I370.010 s0.010 s
Area.Area>Area.get.XCoords_I2960.010 s0.010 s
Area.Area>Area.set.CCoordsMode370.010 s0.010 s
Area.Area>Area.set.CCoords370.010 s0.000 s
Area.Area>Area.get.CCoords_I2960.010 s0.010 s
mlprintjob>mlprintjob.resetTemp180.010 s0.010 s
print>LocalCreatePrintJob60.010 s0.000 s
graphics/private/name>fixTilde60.010 s0.000 s
isunix120.010 s0.010 s
...ernatePrintPath>LocalIsPrintDriver150.010 s0.010 s
...calTryGetframeWithDecorationsShortcut60.010 s0.000 s
...ternatePrintPath>LocalSaveOldProps60.010 s0.010 s
...natePrintPath>LocalWasFigureClosed150.010 s0.010 s
Area.Area>Area.getShowBaseLineImpl740.010 s0.000 s
Area.Area>Area.doGetBaseLine980.010 s0.010 s
Area.Area>Area.get.ShowBaseLine740.010 s0.000 s
hggetbehavior1560.010 s0.010 s
...rnatePrintPath>LocalGetSceneViewer120.010 s0.010 s
...atePrintPath>LocalValidatePrintJob60.010 s0.010 s
mlprintjob>mlprintjob.tostruct60.010 s0.010 s
graphics/private/checkImageSizeForPrint30.010 s0.000 s
imwrite>validateSizes30.010 s0.010 s
intmax60.010 s0.010 s
...teattributes(x,{'char'},{'nonempty'})300.010 s0.010 s
...tes(x,{'char','double'},{'nonempty'})30.010 s0.010 s
median10.010 s0.010 s
getSettingsRoot120.010 s0.010 s
mdbfileonpath>areDirectoriesEqual10 s0.000 s
mdbfileonpath>areFilenamesEqual20 s0.000 s
printopt120 s0.000 s
printtables>localBuildOptions180 s0.000 s
graphics/private/getDefaultDeviceList240 s0.000 s
graphics/private/validate60 s0.000 s
ispc1140 s0.000 s
mdbfileonpath>isObject10 s0.000 s
mdbfileonpath>isPrivate10 s0.000 s
...FileUtils.isNativeMexFile(inFilename)10 s0.000 s
...create@(path)getMexShadowStatus(path)30 s0.000 s
...e@()MLFileUtils.isMdlFile(inFilename)20 s0.000 s
...@()MlxFileUtils.isMlxFile(inFilename)10 s0.000 s
...te@(path)getMlxFileShadowStatus(path)10 s0.000 s
...ate@()MLFileUtils.isPFile(inFilename)10 s0.000 s
...eate@(path)getPFileShadowStatus(path)10 s0.000 s
fullfile>ensureTrailingFilesep110 s0.000 s
fullfile>addTrailingFileSep110 s0.000 s
fullfile>refinePath110 s0.000 s
...FileUtils.isNativeMexFile(inFilename)10 s0.000 s
mdbfileonpath>doesFileExist50 s0.000 s
java.io.File (Java method)100 s0.000 s
...;@()MLFileUtils.isMdlFile(inFilename)20 s0.000 s
...@()MlxFileUtils.isMlxFile(inFilename)10 s0.000 s
...gt;@()MLFileUtils.isPFile(inFilename)10 s0.000 s
filesep180 s0.000 s
blanks20 s0.000 s
mdbfileonpath>isPackageDirectory30 s0.000 s
isdir60 s0.000 s
pathsep60 s0.000 s
fileread20 s0.000 s
str2num460 s0.000 s
str2num>protected_conversion460 s0.000 s
Load_dataset_information20 s0.000 s
linspace840 s0.000 s
smooth_gaussian400 s0.000 s
optimfun/private/uselargeoptimstruct260 s0.000 s
optimfun/private/optimoptiongetfields260 s0.000 s
optimset>onDeprecationPathOptionCheck780 s0.000 s
optimset>displayType260 s0.000 s
optimset>onOffType260 s0.000 s
optimset>nonNegInteger260 s0.000 s
fcnchk260 s0.000 s
fliplr120 s0.000 s
verLessThan40 s0.000 s
verLessThan>getParts40 s0.000 s
xlim440 s0.000 s
...areaHGUsingMATLABClasses>parseargs370 s0.000 s
parseparams370 s0.000 s
specgraph/private/checkpvpairs370 s0.000 s
xychk370 s0.000 s
...vate/areaHelper>localComputeCoords370 s0.000 s
flipud370 s0.000 s
...ivate/areaHelper>localAddListeners370 s0.000 s
repmat>@(x)double(full(x))2300 s0.000 s
specgraph/private/datachk740 s0.000 s
Area.Area>Area.get.Clipping_I740 s0.000 s
Area.Area>Area.get.Edge_I4440 s0.000 s
Area.Area>Area.get.AlignVertexCenters_I370 s0.000 s
Area.Area>Area.get.LineWidth370 s0.000 s
Area.Area>Area.get.LineWidth_I1480 s0.000 s
...@(obj,evd)(hObj.sendDataChangedEvent)370 s0.000 s
Area.Area>Area.set.FaceColorMode370 s0.000 s
Area.Area>Area.get.FaceColorMode370 s0.000 s
Area.Area>Area.get.FaceColor1110 s0.000 s
Area.Area>Area.get.FaceColor_I1480 s0.000 s
Area.Area>Area.set.EdgeColorMode370 s0.000 s
Area.Area>Area.get.EdgeColorMode370 s0.000 s
Area.Area>Area.get.EdgeColor1110 s0.000 s
Area.Area>Area.set.XCoordsMode370 s0.000 s
Area.Area>Area.get.XCoordsMode370 s0.000 s
Area.Area>Area.set.XCoords370 s0.000 s
Area.Area>Area.set.XCoords_I370 s0.000 s
Area.Area>Area.set.YCoordsMode370 s0.000 s
Area.Area>Area.get.YCoordsMode370 s0.000 s
Area.Area>Area.set.YCoords370 s0.000 s
Area.Area>Area.set.YCoords_I370 s0.000 s
Area.Area>Area.get.YCoords_I2960 s0.000 s
Area.Area>Area.get.CCoordsMode370 s0.000 s
Area.Area>Area.set.CCoords_I370 s0.000 s
Area.Area>Area.set.BaseArea370 s0.000 s
Area.Area>Area.get.BaseArea1850 s0.000 s
Area.doPostSetup370 s0.000 s
general/private/isfigure60 s0.000 s
graphics/private/isSLorSF540 s0.000 s
graphics/private/isslhandle540 s0.000 s
graphics/private/useOriginalHGPrinting360 s0.000 s
print>LocalHandleSimulink60 s0.000 s
graphics/private/validateHandleToPrint60 s0.000 s
...ForHandleToPrint>LocalCheckHandles120 s0.000 s
graphics/private/isfigure420 s0.000 s
graphics/...te/checkArgsForHandleToPrint120 s0.000 s
...rivate/inputcheck>LocalCheckDevice60 s0.000 s
getprinttemplate120 s0.000 s
isFigureShowEnabled60 s0.000 s
graphics/private/setup60 s0.000 s
...tPath>LocalDoTransparentBackground60 s0.000 s
preprocessextents1480 s0.000 s
Area.Area>Area.get.CDataMapping1110 s0.000 s
Area.Area>Area.get.CDataMapping_I1110 s0.000 s
isInvalidInLogScale2220 s0.000 s
isInvalidInLogScale>basicImpl2220 s0.000 s
Area.modifybasevalue1110 s0.000 s
Area.Area>Area.get.BrushHandles1110 s0.000 s
Area.Area>Area.get.SelectionHandle1110 s0.000 s
Area.Area>Area.get.SelectionHandle_I1110 s0.000 s
...ath>LocalGetCopyOptionsPreferences60 s0.000 s
com.mathworks.hg.peer.HG2FigurePeer (Java method)120 s0.000 s
...)ensureRendererSettingConsistency(pj)60 s0.000 s
workspacefunc>getCleanupHandler20 s0.000 s
...erer/ensureRendererSettingConsistency60 s0.000 s
refresh30 s0.000 s
...)ensureRendererSettingConsistency(pj)60 s0.000 s
uitools/private/allchildRootHelper1560 s0.000 s
...set(rootobj,'ShowHiddenHandles',Temp)1560 s0.000 s
...pace.MatlabWorkspaceListener.swl(swl)20 s0.000 s
workspacefunc20 s0.000 s
Area.Area>Area.getBaseLineImpl240 s0.000 s
Area.Area>Area.get.BaseLine240 s0.000 s
...vate/adjustbackground>color2matrix4320 s0.000 s
...vate/adjustbackground>matrix2color4320 s0.000 s
rmfield120 s0.000 s
cellstr180 s0.000 s
graphics/private/ptrestorehg60 s0.000 s
...ate/alternatePrintPath>setSelected120 s0.000 s
hggetbehavior>localPeek1560 s0.000 s
Area.Area>Area.set.LineWidthMode740 s0.000 s
Area.Area>Area.get.LineWidthMode740 s0.000 s
...nitsForPrint>create@(x)~isempty(x)60 s0.000 s
...odifyUnitsForPrint>@(x)~isempty(x)300 s0.000 s
...;1).*(x*(scaleFactor))+(x>=1).*(x)30 s0.000 s
printtemplate120 s0.000 s
graphics/private/blt60 s0.000 s
...tePrintPath>LocalDealWithResizeFcn60 s0.000 s
getpixelposition60 s0.000 s
...tPath>create@()printCleanup(pj,pt)60 s0.000 s
...gt;LocalAddHeaderInfoToPrintJobStruct60 s0.000 s
...>localIsPrintHeaderHeaderSpecEmpty60 s0.000 s
...tePrintPath>LocalPostProcessOutput30 s0.000 s
datestr>getdateform60 s0.000 s
...te/imwriteArgsForPrint>LocalGetDPI30 s0.000 s
imformats60 s0.000 s
imformats>find_in_registry60 s0.000 s
imwrite>parse_inputs30 s0.000 s
...teattributes(x,{'double'},{'scalar'})90 s0.000 s
...(x,{'double'},{'nonempty','>=',1})30 s0.000 s
...s(x,{'double'},{'>=',0,'<=',1})30 s0.000 s
...{'size',[size(data,1),size(data,2)]})30 s0.000 s
...{'char','double'},{'row','nonempty'})30 s0.000 s
...es(x,{'double'},{'scalar','>=',0})30 s0.000 s
...'row','numel',8,'>=',0,'<=',1})30 s0.000 s
...tes(x,{'char','double'},{'nonempty'})60 s0.000 s
...alidateattributes(x,{'char'},{'row'})30 s0.000 s
...teattributes(x,{'char'},{'nonempty'})60 s0.000 s
...teattributes(x,{'double'},{'scalar'})60 s0.000 s
ismember>ismemberR2012a90 s0.000 s
ismember>ismemberBuiltinTypes90 s0.000 s
ismember90 s0.000 s
validatestring60 s0.000 s
validatestring>checkInputs60 s0.000 s
validatestring>checkString60 s0.000 s
imagesci/private/writepng>CheckTextItem30 s0.000 s
hot160 s0.000 s
mean90 s0.000 s
median>meanof10 s0.000 s
...pace.MatlabWorkspaceListener.swl(swl)20 s0.000 s
workspacefunc>getWhosInformation20 s0.000 s

Self time is the time spent in a function excluding the time spent in its child functions. Self time also includes overhead resulting from the process of profiling.