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1. DeepSTARR DeepSTARR Public

   Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Drosophila melanogaster S2 cells

   Jupyter Notebook 72 10

2. Variant_STARRseq Variant_STARRseq Public

   Scripts to reproduce the results of the random variant and oligo STARR-seq paper

   HTML 1 1

3. motif-clustering motif-clustering Public

   Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy

   R 28 5

4. PanCancer_CentrosomeAmplification PanCancer_CentrosomeAmplification Public

   Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome

   5 4

5. instadeepai/nucleotide-transformer instadeepai/nucleotide-transformer Public

   Foundation Models for Genomics & Transcriptomics

   Jupyter Notebook 800 85