OccuPy

A fast and simple python module and program to estimate local scaling of cryo-EM maps, to approximate relative occupancy and/or resolution, and optionally also equalise the map according to occupancy while suppressing solvent amplification.

Further documentation, instructions, and tutorials are available here.

Quick install instructions via pip

Follow the link above for more instrucions. The instructions below are minimal just intended to provide obvious and minimal instructions for posterity and development use.

install from PyPi (pip install)

pip install occupy

Install from source (pip install)

If you are a developer or prefer to download the source code for some other reason, you can also install from the cloned repo

$ git clone https://github.com/bforsbe/OccuPy.git
$ cd occupy 
$ pip install -e . 

You should also be able to simply run the occupy_lib/occupy_gui.py to run the GUI or occupy_lib/occupy.py for the command-line interface.