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Update executionsTemplate.xml

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commit 582f8978f22ede944704a9b98defc779fdb890c5 1 parent 4de0b45
@marina-manrique marina-manrique authored
Showing with 12 additions and 4 deletions.
  1. +12 −4 executionsTemplate.xml
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16 executionsTemplate.xml
@@ -1,9 +1,17 @@
<scheduled_executions>
<execution>
+ <class_full_name>com.era7.bioinfo.annotation.FixFastaHeaders</class_full_name>
+ <arguments>
+ <argument>XX_sequences.fna</argument>
+ <argument>XX_sequences_header_fixed.fna</argument>
+ <argument>XX</argument>
+ </arguments>
+ </execution>
+ <execution>
<class_full_name>com.era7.bioinfo.annotation.PredictGenes</class_full_name>
<arguments>
<argument>XX_proteins_tBLASTn.xml</argument>
- <argument>XX_sequences.fna</argument>
+ <argument>XX_sequences_header_fixed.fna</argument>
<argument>XX_PredictedGenes.xml</argument>
<argument>400</argument>
<argument>false</argument>
@@ -25,7 +33,7 @@
<argument>XX_SolvedOverlaps.xml</argument>
<argument>102</argument>
<argument>XX_RNA_blastn.xml</argument>
- <argument>XX_sequences.fna</argument>
+ <argument>XX_sequences_header_fixed.fna</argument>
<argument>genetic_code.txt</argument>
</arguments>
</execution>
@@ -69,7 +77,7 @@
<class_full_name>com.era7.bioinfo.annotation.GetIntergenicSequences</class_full_name>
<arguments>
<argument>XX_Annotation.xml</argument>
- <argument>XX_sequences.fna</argument>
+ <argument>XX_sequences_header_fixed.fna</argument>
<argument>XX_Intergenic.xml</argument>
<argument>XX_Intergenic.fasta</argument>
</arguments>
@@ -79,7 +87,7 @@
<arguments>
<argument>XX_Annotation.xml</argument>
<argument>XX_GenBankGeneralInfo.xml</argument>
- <argument>XX_sequences.fna</argument>
+ <argument>XX_sequences_header_fixed.fna</argument>
<argument>XX</argument>
</arguments>
</execution>
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