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added XML template for Genbank files

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commit dea020ed5ea3e0c98d684aed20502f67fde3db95 1 parent f90bb95
@marina-manrique marina-manrique authored
Showing with 61 additions and 0 deletions.
  1. +61 −0 GenBankExternalData.xml
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61 GenBankExternalData.xml
@@ -0,0 +1,61 @@
+<gen_bank_xml>
+
+ <locus_name>XX</locus_name>
+ <!--The locus name-->
+ <sequence_length>.</sequence_length>
+ <!--sequence length is now taken from the contig. No need to set it up here-->
+ <molecule_type>DNA</molecule_type>
+ <stranded_type></stranded_type>
+ <!--
+ Stranded type must be either an empty string or one of these:
+ ss- (single-stranded)
+ ds- (double-stranded)
+ ms- (mixed-stranded)
+ -->
+ <dna_type>DNA</dna_type>
+ <!--
+ Dna type tag must be one of these:
+ NA
+ DNA
+ RNA
+ tRNA (transfer RNA)
+ rRNA (ribosomal RNA)
+ mRNA (messenger RNA)
+ uRNA (small nuclear RNA)
+ -->
+ <gen_bank_division>BCT</gen_bank_division>
+ <!--
+ Gen bank division tag must be one of these:
+ 1. PRI - primate sequences
+ 2. ROD - rodent sequences
+ 3. MAM - other mammalian sequences
+ 4. VRT - other vertebrate sequences
+ 5. INV - invertebrate sequences
+ 6. PLN - plant, fungal, and algal sequences
+ 7. BCT - bacterial sequences
+ 8. VRL - viral sequences
+ 9. PHG - bacteriophage sequences
+ 10. SYN - synthetic sequences
+ 11. UNA - unannotated sequences
+ 12. EST - EST sequences (expressed sequence tags)
+ 13. PAT - patent sequences
+ 14. STS - STS sequences (sequence tagged sites)
+ 15. GSS - GSS sequences (genome survey sequences)
+ 16. HTG - HTGS sequences (high throughput genomic sequences)
+ 17. HTC - HTC sequences (high throughput cDNA sequences)
+ 18. ENV - Environmental sampling sequences
+ 19. CON - Constructed sequences
+ -->
+ <modification_date>19-OCT-2011</modification_date>
+ <!--
+ Modificiation date must have the format: dd-MMM-yyyy (e.g., 15-MAR-1991)
+ -->
+ <linear>true</linear> <!-- true for linear, false for circular -->
+ <definition>Genome of XX</definition>
+ <accession>.</accession>
+ <keywords>.</keywords>
+ <source>.</source>
+ <organism>XX</organism>
+ <organism_complete_taxonomy_lineage>cellular organisms; Bacteria; XX</organism_complete_taxonomy_lineage>
+ <comment>-</comment>
+</gen_bank_xml>
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