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Age_Simulation_Report update Apr 24, 2020
EDA update repo Apr 14, 2020
Input
Lesefni update Apr 24, 2020
Modeling update Apr 24, 2020
Myndir update Mar 16, 2020
Old update repo readme, today's predictions, model and data Apr 3, 2020
Output
Samskipti/Thor_Logistic Updating the repo Mar 18, 2020
Simulation_Report update Apr 24, 2020
Stan
WIP update repo readme, today's predictions, model and data Apr 3, 2020
dashboard
.gitattributes stop tracking RData Mar 31, 2020
.gitignore update gitignore and gitattributes Mar 31, 2020
About-the-Model.html update dashboard data. update model: daily counts and negative binomiall Mar 24, 2020
Analyze_Latent_Model.R update repo Apr 15, 2020
COVID19.Rproj add everything to repo Mar 15, 2020
Make_Age_Simulation.R
Make_Landlaeknir_Data.R
Make_Past_Models.R
Make_Past_Models_GenLogistic.R
Make_Pop_Data.R
Make_Stan_Data.R update Apr 24, 2020
Make_Stan_GenLogistic_Model.R update repo Apr 15, 2020
Make_Stan_NegBin_Model.R
Make_Stan_NegBin_Model_Latent.R update repo Apr 15, 2020
Make_Stan_Predictions_NegBin.R
New Sigmond1999.pdf daily update. set up a richards model Apr 5, 2020
README.md update repo Apr 14, 2020
Rplot.png
Rplot01.png daily update. set up a richards model Apr 5, 2020
Rplot02.png update Apr 12, 2020
Update_Dashboard_Data.R update dashboard data Mar 29, 2020
evolution.gif
lancet_plot 2.png
lancet_plot.png
new_cases.png historical validation Apr 7, 2020
rate_evolution.gif historical validation Apr 7, 2020
s41597-020-0448-0.pdf.pdf update model Mar 28, 2020

README.md

Modeling

The hierarchical logistic growth model is estimated using Make_Stan_NegBin_Model.R, which sources scripts Make_Stan_Data.R, Make_Landlaeknir_Data.R and Make_Pop_Data.R.

I wrote Make_Past_Models.R to perform historical validation on the Poisson mode but I have yet to update it for the Negative Binomial model.

Dashboard

The University of Iceland dashboard has been moved to https://github.com/sindribaldur/dashboard_covid.hi.is, but I will keep the old version here.

The Team

  • Brynjólfur Gauti Jónsson, doktorsnemi í líftölfræði við Háskóla Íslands / PhD Candidate in biostatistics at the University of Iceland (UI)

  • Birgir Hrafnkelsson, prófessor í tölfræði við HÍ / Professor of Statistics at the UI

  • Jón Magnús Jóhannesson, sérnámslæknir í lyflækningum, Landspítala / CT2 in Core Medical Training at Landspitali University Hospital in Iceland

  • Jóhanna Jakobsdóttir, lektor í líftölfræði við HÍ / Associate Professor of Statistics at the UI

  • Sigríður Haraldsd. Elínardóttir, sviðsstjóri heilbrigðisupplýsinga EL / Head of Division Health Information at The Directorate of Health in Iceland

  • Þórarinn Jónmundsson, tölfræðinemi við HÍ / MS Candidate in statistics student at the UI

  • Thor Aspelund, prófessor í líftölfræði við HÍ og Hjartavernd / Professor of Biostatistics at the UI

  • Unnur A. Valdimarsdóttir, prófessor í faraldsfræði við HÍ / Professor of Epidemiology at the UI

License: GPL v3

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