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superType bug #68

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bgreenwell opened this issue Apr 6, 2018 · 0 comments
Closed

superType bug #68

bgreenwell opened this issue Apr 6, 2018 · 0 comments
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@bgreenwell
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@bgreenwell bgreenwell commented Apr 6, 2018

From stackoverflow:

# Load required packages
library(pdp)
library(xgboost)

# Simulate training data with ten million records
set.seed(101)
trn <- as.data.frame(mlbench::mlbench.friedman1(n = 1e+07, sd = 1))
trn=trn[sample(nrow(trn), 500), ]
trn$y=ifelse(trn$y>16,1,0)

# Fit an XGBoost classification(logistic) model
set.seed(102)
bst <- xgboost(data = data.matrix(subset(trn, select = -y)),
           label = trn$y,
           objective = "reg:logistic",
           nrounds = 100,
           max_depth = 2,
           eta = 0.1)
 #partial dependency plot

  pd <- partial(bst$handle,
            pred.var = c("x.1"), 
            grid.resolution = 10, 
            train = data.matrix(subset(trn, select = -y)),
            prob=TRUE,
            plot = FALSE,
            .progress = "text")

 Warning message:
 In superType.default(object) :
 `type` could not be determined; assuming `type = "regression"`

This should issue an error, not a waring!? Also, XGBoost support will need to be amended to correctly handle objective = "reg:logistic", which seems to provide continuous predictions in [0, 1].

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