-
University of Freiburg
- Freiburg (Germany)
- orcid.org/0000-0002-3079-6586
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3,700 contributions in the last year
Activity overview
Contributed to
usegalaxy-eu/website,
galaxyproject/tools-iuc,
BioContainers/multi-package-containers
and 106 other
repositories
Contribution activity
June 2022
Created 69 commits in 11 repositories
Created a pull request in galaxyproject/galaxy that received 3 comments
Fix the swift integration tests that are using some minio container
The minio container yields an error with /tmp/data. Maybe that fixes the integration tests?
bag@bag:~$ docker run -p 9000:9000 -i -t minio/minio:la…
+1
−1
•
3
comments
Opened 4 other pull requests in 4 repositories
usegalaxy-eu/infrastructure-playbook
1
merged
usegalaxy-eu/website
1
merged
bioconda/bioconda-recipes
1
open
galaxyproject/tools-iuc
1
merged
Reviewed 89 pull requests in 10 repositories
galaxyproject/tools-iuc
24 pull requests
- kc-align fix number of threads
- Update to merqury tool wrapper
- Add new tool SynDiva
- Use 7z to decompress ncbi_datasets archives
- ragtag: symlink input fasta files
- spyboat: allow 1 line difference in output
- nanocompore: symlink reference
- anndata export: open loompy file read only
- cutadapt: fix test
- MaxBin2: Modify reads/abunds to use repeat instead of multiple to support using collection
- Update mlst to 2.22.0
- Update prot-scriber to v.0.1.3
- CONCOCT: Update versions, replace scripts and tests
- Update pyega3.xml: missing --start
- Mitos2: mising genes output
- Add yahs tool
- Upgrade vSNP tools to version 3
- Updating tools/spaln from version 2.4.7 to 2.4.9
- Don't include genomic cds and rna fasta files in genomic fasta collec…
- Seqcomplexity
- Updating tools/purge_dups from version 1.2.5 to 1.2.6
- Produce nested collection for ncbi_datasets genome_fasta output
- Meryl: fix output trio mode
- Add seqkit stats and fx2tab tools
bioconda/bioconda-recipes
23 pull requests
- Update downloading and handling of dependencies in MetaNovo recipe
- pypgatk version 0.0.22
- Add r-geneexpressionfromgeo.
- Update fiji
- Update entrez-direct recipe to use extended-base
- Update prot-scriber to 0.1.3
- Install_miga_v1.0.0
- Update PlasmidFinder for better container support
- Update thermorawfileparser to 1.4.0
- Update chipseeker v.1.32.0
- Update meta.yaml
- Update meta.yaml of StrainScan V1.0.10
- Update cgranges for Python 3.6
- Update pcaone
- Update sam2lca python version to 3.7
- Update deepvariant to 1.4.0
- Update abritamr to 1.0.8
- Update perl-text-balanced to 2.06
- Update metapi to 2.1.4
- Update gffutils to 0.11.0
- Update r-restfulr to 0.0.14
- Update r-dartr to 2.0.4
- Update ViennaRNA Package to upstream version 2.5.1
galaxyproject/galaxy
16 pull requests
- [22.05] Switch History Modal: fix pagination
- [22.05] Fix showing invocations for a particular workflow.
- Storage Dashboard: fix unlimited quota display
- Remove fabric as a dependency for Galaxy.
- Support phylocanvas autobuild
- Fix jest test warnings for saved rules and markdown test
- Fix a small error in job doc
- Refactor uses_shed.py so test_base doesn't depend on galaxy-app.
- Small tour tweaks.
- More workflow Jest tests.
- Implement initial GA4GH DRS Support.
- Script to validate tours structure.
- Drop update_time from JobStateHistory
- Workflow deletion selenium tests.
- Remove can_eliminate_tool_dependency from tool shed code.
- Localize workflow deletion confirmation message...
usegalaxy-eu/website
6 pull requests
BioContainers/multi-package-containers
5 pull requests
bgruening/galaxytools
5 pull requests
usegalaxy-eu/usegalaxy-eu-tools
4 pull requests
galaxyproject/training-material
3 pull requests
galaxyproteomics/tools-galaxyp
2 pull requests
bioconda/bioconda-utils
1 pull request
Created an issue in galaxyproject/galaxy that received 7 comments
Slow tool form building on EU (for certain histories)
On EU the tool form build can be really slow. Up to minutes. We investigated this during the last days and could drill it down to: it only affects…
7
comments
Opened 8 other issues in 5 repositories
galaxyproject/galaxy
2
open
1
closed
usegalaxy-eu/website
2
open
usegalaxy-au/infrastructure-playbooks
1
open
galaxyproject/tools-iuc
1
open
galaxyproject/galaxy-hub
1
open
2
contributions
in private repositories
Jun 7 – Jun 13