3,701 contributions in the last year
Created 69 commits in 11 repositories
Created a pull request in galaxyproject/galaxy that received 3 comments
The minio container yields an error with /tmp/data. Maybe that fixes the integration tests?
bag@bag:~$ docker run -p 9000:9000 -i -t minio/minio:la…
Opened 4 other pull requests in 4 repositories
Reviewed 90 pull requests in 10 repositories
25 pull requests
- Add wrapper for DAS tool
- kc-align fix number of threads
- Update to merqury tool wrapper
- Add new tool SynDiva
- Use 7z to decompress ncbi_datasets archives
- ragtag: symlink input fasta files
- spyboat: allow 1 line difference in output
- nanocompore: symlink reference
- anndata export: open loompy file read only
- cutadapt: fix test
- MaxBin2: Modify reads/abunds to use repeat instead of multiple to support using collection
- Update mlst to 2.22.0
- Update prot-scriber to v.0.1.3
- CONCOCT: Update versions, replace scripts and tests
- Update pyega3.xml: missing --start
- Mitos2: mising genes output
- Add yahs tool
- Upgrade vSNP tools to version 3
- Updating tools/spaln from version 2.4.7 to 2.4.9
- Don't include genomic cds and rna fasta files in genomic fasta collec…
- Updating tools/purge_dups from version 1.2.5 to 1.2.6
- Produce nested collection for ncbi_datasets genome_fasta output
- Meryl: fix output trio mode
- Add seqkit stats and fx2tab tools
23 pull requests
- Update downloading and handling of dependencies in MetaNovo recipe
- pypgatk version 0.0.22
- Add r-geneexpressionfromgeo.
- Update fiji
- Update entrez-direct recipe to use extended-base
- Update prot-scriber to 0.1.3
- Update PlasmidFinder for better container support
- Update thermorawfileparser to 1.4.0
- Update chipseeker v.1.32.0
- Update meta.yaml
- Update meta.yaml of StrainScan V1.0.10
- Update cgranges for Python 3.6
- Update pcaone
- Update sam2lca python version to 3.7
- Update deepvariant to 1.4.0
- Update abritamr to 1.0.8
- Update perl-text-balanced to 2.06
- Update metapi to 2.1.4
- Update gffutils to 0.11.0
- Update r-restfulr to 0.0.14
- Update r-dartr to 2.0.4
- Update ViennaRNA Package to upstream version 2.5.1
16 pull requests
- [22.05] Switch History Modal: fix pagination
- [22.05] Fix showing invocations for a particular workflow.
- Storage Dashboard: fix unlimited quota display
- Remove fabric as a dependency for Galaxy.
- Support phylocanvas autobuild
- Fix jest test warnings for saved rules and markdown test
- Fix a small error in job doc
- Refactor uses_shed.py so test_base doesn't depend on galaxy-app.
- Small tour tweaks.
- More workflow Jest tests.
- Implement initial GA4GH DRS Support.
- Script to validate tours structure.
- Drop update_time from JobStateHistory
- Workflow deletion selenium tests.
- Remove can_eliminate_tool_dependency from tool shed code.
- Localize workflow deletion confirmation message...
6 pull requests
5 pull requests
5 pull requests
4 pull requests
3 pull requests
1 pull request
Created an issue in galaxyproject/galaxy that received 7 comments
On EU the tool form build can be really slow. Up to minutes. We investigated this during the last days and could drill it down to: it only affects…