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Mac OS

The following explains how to get going on Mac OS.

You need to install the Xcode Developer Tools package, which is found in the App Store.

PyPI Package

If you use Bohrium through Python, we strongly recommend to install Bohrium through pypi, which will include BLAS, LAPACK, OpenCV, and OpenCL support:

python -m pip install --user bohrium

Note

If you get an error message saying that no package match your criteria it is properly because you are using a Python version for which `no package exist https://pypi.org/project/bohrium-api/#files`_ . Please contact us and we will build a package using your specific Python version.

Install From Source Package

Start by installing Homebrew as explained on their website

/usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"

Install dependencies:

brew install python
brew install cmake
brew install boost --with-icu4c
brew install libsigsegv
python3 -m pip install --user numpy cython twine gcc7

Visit Bohrium on github.com, download the latest release: https://github.com/bh107/bohrium/releases/latest or download master, and then build it:

wget https://github.com/bh107/bohrium/archive/master.zip
unzip master.zip
cd bohrium-master
mkdir build
cd build
export PATH="$(brew --prefix)/bin:/usr/local/opt/llvm/bin:/usr/local/opt/opencv3/bin:$PATH"
export CC="clang"
export CXX="clang++"
export C_INCLUDE_PATH=$(llvm-config --includedir)
export CPLUS_INCLUDE_PATH=$(llvm-config --includedir)
export LIBRARY_PATH=$(llvm-config --libdir):$LIBRARY_PATH
cmake .. -DCMAKE_INSTALL_PREFIX=<path to install directory>
make
make install

Note

The default install directory is ~/.local

Note

To compile to a custom Python (with valgrind debug support for example), set -DPYTHON_EXECUTABLE=<custom python binary>.

Finally, you need to set the DYLD_LIBRARY_PATH and LIBRARY_PATH environment variables and if you didn't install Bohrium in $HOME/.local/lib your need to set PYTHONPATH as well.

The DYLD_LIBRARY_PATH and LIBRARY_PATH should include the path to the installation directory:

export DYLD_LIBRARY_PATH="<install dir>:$DYLD_LIBRARY_PATH"
export LIBRARY_PATH="<install dir>:$LIBRARY_PATH"

The PYTHONPATH should include the path to the newly installed Bohrium Python module:

export PYTHONPATH="<install dir>/lib/python<python version>/site-packages:$PYTHONPATH"

Check Your Installation

Check installation by printing the current runtime stack:

python -m bohrium --info