Extract NIHM Data Archive compatible metadata from Brain Imaging Data Structure compatible datasets
pip install https://github.com/INCF/BIDS2NDA/archive/master.zip
usage: bids2nda [-h] [-v] BIDS_DIRECTORY GUID_MAPPING OUTPUT_DIRECTORY BIDS to NDA converter. positional arguments: BIDS_DIRECTORY Location of the root of your BIDS compatible directory GUID_MAPPING Path to a text file with participant_id to GUID mapping. You will need to use the GUID Tool (https://ndar.nih.gov/contribute.html) to generate GUIDs for your participants. OUTPUT_DIRECTORY Directory where NDA files will be stored optional arguments: -h, --help show this help message and exit
GUID_MAPPING file format
The is the file format produced by the GUID Tool: one line per subject in the format
<participant_id> - <GUID>
Column experiment_id must be manually filled in for now. This is based on experiment ID's received from NDA after setting the study up through the NDA website here.