• ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

    Scala 755 270 Updated Oct 16, 2018
  • A scalable genome browser. Apache 2 licensed.

    Jupyter Notebook 76 21 Updated Oct 15, 2018
  • Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 28 36 Apache-2.0 Updated Sep 20, 2018
  • A Variant Caller, Distributed. Apache 2 licensed.

    Scala 67 40 Updated Jul 9, 2018
  • Big Data Genomics ADAM Pipe API wrappers for bioinformatics tools. Apache 2 licensed.

    Scala 10 9 Updated Jul 6, 2018
  • deca

    Forked from mlinderm/deca

    Distributed exome CNV analyzer. Apache 2 licensed.

    Scala 4 Updated May 28, 2018
  • General (non-omics) code used across BDG products. Apache 2 licensed.

    Scala 20 25 Updated May 18, 2018
  • Scala 5 13 Updated Apr 24, 2018
  • Web Site for the Big Data Genomics Group

    HTML 9 7 Updated Apr 13, 2018
  • Distributed Set Theory for Genomics

    Scala 4 3 Updated Mar 27, 2018
  • Conversions to and from Big Data Genomics Avro Formats. Apache 2 licensed.

    Java 5 Apache-2.0 Updated Feb 28, 2018
  • Awesome list of applications that extend Big Data Genomics ADAM. CC0 licensed.

    3 3 Updated Jan 19, 2018
  • An RNA pipeline built on top of ADAM. Apache 2 licensed.

    Scala 18 16 Updated Jan 19, 2018
  • Toil workflows for bigdatagenomics tools. Apache 2 licensed.

    Python 2 5 Apache-2.0 Updated Nov 7, 2017
  • A refreshing treatment for all quality control ailments. Apache 2 licensed.

    Scala 2 6 Apache-2.0 Updated Oct 13, 2016
  • Exemplar API that mediates Toil with a WDL front-end and workflow tracking.

    Java 1 Apache-2.0 Updated Aug 1, 2016
  • Ready-to-go Parquet-formatted public 'omics datasets

    Python 29 7 Apache-2.0 Updated Nov 2, 2015
  • Recipes using BDG projects. Apache 2 licensed.

    Shell 4 3 Apache-2.0 Updated Mar 25, 2015
  • Assembler for PacBio reads. Apache 2 licensed.

    Scala 4 3 Updated Mar 14, 2015
  • Read error correction utilities.

    2 Apache-2.0 Updated Mar 1, 2015
  • Notebook tools for Big Data Genomics. Apache 2 licensed.

    JavaScript 3 575 Apache-2.0 Updated Mar 1, 2015
  • Utility classes for wrapping services or other interfaces around a Spark/ADAM cluster. Apache 2 licensed.

    Java 5 9 Updated Nov 17, 2014
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