Skip to content
Commits on Apr 22, 2014
  1. @jey

    Clarify BQSR debug flags

    jey committed Apr 21, 2014
Commits on Apr 9, 2014
  1. @jey

    remove tabs in pom.xml

    jey committed Apr 8, 2014
  2. @jey

    Add CycleCovariate

    jey committed Apr 8, 2014
  3. @jey

    style and naming fixes

    jey committed Apr 8, 2014
  4. @jey
  5. @jey

    Add BQSR debug flags

    jey committed Apr 8, 2014
  6. @jey

    BQSR cleanups and fixes

    jey committed Apr 2, 2014
Commits on Mar 11, 2014
  1. @jey

    Add end-to-end test for BQSR

    jey committed Mar 11, 2014
  2. @jey

    Add comments and style fixes

    jey committed Mar 6, 2014
  3. @jey
  4. @jey
  5. @jey

    MapQ field can be null

    jey committed Feb 26, 2014
  6. @jey
  7. @jey
  8. @jey

    Add sanity check

    jey committed Feb 26, 2014
  9. @jey

    Cosmetic

    jey committed Feb 26, 2014
  10. @jey

    Enrich CSV output

    jey committed Feb 26, 2014
  11. @jey
  12. @jey
  13. @jey
  14. @jey
  15. @jey

    Reproduce GATK's error estimates

    jey committed Feb 25, 2014
  16. @jey
  17. @jey

    Fix global delta

    jey committed Feb 25, 2014
  18. @jey

    Revert "Optimization: use integer Phred scores during recalibration"

    This reverts commit 551b409.
    
    Conflicts:
    	adam-core/src/main/scala/edu/berkeley/cs/amplab/adam/rdd/recalibration/Recalibrator.scala
    jey committed Feb 25, 2014
  19. @jey

    Fixes to match GATK more closely

    jey committed Feb 25, 2014
  20. @jey

    Cosmetic

    jey committed Feb 25, 2014
  21. @jey

    Cleanup Observation.empiricalQuality

    jey committed Feb 22, 2014
  22. @jey

    Skip records without valid MapQ

    jey committed Feb 21, 2014
  23. @jey
  24. @jey
  25. @jey

    Use fold instead of reduce

    jey committed Feb 21, 2014
  26. @jey
  27. @jey
  28. @jey
Something went wrong with that request. Please try again.