Flattening the Genotype schema #1002

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akmorrow13 opened this Issue Apr 15, 2016 · 2 comments

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akmorrow13 commented Apr 15, 2016

We incur heavy overhead from queries which find genotypes in which their variants meet a certain criteria. If we were to flatten the genotype schema, query times could be reduced from 130 seconds to 8 seconds over a 70 kb range.

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akmorrow13 May 18, 2016

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Yes this was fixed by bigdatagenomics/bdg-formats#77.

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akmorrow13 commented May 18, 2016

Yes this was fixed by bigdatagenomics/bdg-formats#77.

@heuermh heuermh closed this May 18, 2016

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