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Samtools (htslib) integration testing #1120
changed the title from
Samtools integration testing
Samtools (htslib) integration testing
Aug 19, 2016
Wanted to see if anyone has suggestions on three aspects of this before I get going on it:
1) How should we inform the test suite of where it can find samtools executable?
Going out of order:
That sounds good to me!
We'll want to tag all of these tests with some sort of an integration test tag. That said, I think that requiring Docker for the integration tests is A-OK. We'll be the main consumers of the integration test suite.
We'll also need to create a repo with integration test files, because these should be real life sized inputs.
I would probably put them in an