how to collect the .adam files from Spark cluster multiple nodes and some questions about avocado #1140

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car2008 opened this Issue Aug 29, 2016 · 0 comments

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car2008 commented Aug 29, 2016

Hi @fnothaft , i'm sorry to disturb you again, i have two questions:

After I ran ADAM on Spark cluster by running ./bin/adam-submit --master spark://spark03:7077,spark04:7077 -- vcf2adam hdfs://192.168.2.85:9000/user/ALL.vcf /home/file/2.adam, but the .adam files are spread across multiple nodes,how can i get all the .adam files in one folder?

now i'm learning avocado , also have some different versions from what i'm using , dose it work well with the environment including adam 0.19.0 , spark 1.6.1 ,jdk1.8? And i will try it . Is the submit command like that : /bin/avocado-submit 2.adam chr22.fa.adam 2.vcf.adam?Could it work on Spark cluster like adam ?

@car2008 car2008 changed the title from how to collect the .adam files from multiple nodes and some questions about avocado to how to collect the .adam files from Spark cluster multiple nodes and some questions about avocado Aug 29, 2016

@fnothaft fnothaft closed this Mar 3, 2017

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