Join GitHub today
GitHub is home to over 28 million developers working together to host and review code, manage projects, and build software together.Sign up
gVCF - can't load multi-allelic sites #1202
I'm trying to input the file:
I believe I solved the SB tag problem of #1199
However, now on the VCF row below I get the following error:
Note, clearly the row above is not a reference block, it is called multi-allelic site within the gVCF file
I'm working on a patch for all the gVCF stuff that should hopefully hit mid next week. Can you make a subset of that VCF that contains the header + the lines implicated here and in #1199 and open a PR with tests that reproduce the two failures? I can then pull them in to my patch to test my patch.