Join GitHub today
GitHub is home to over 28 million developers working together to host and review code, manage projects, and build software together.Sign up
Javac error: incompatible types: SparkContext cannot be converted to ADAMContext #1217
Not sure if this is an issue or something that we knew would happen.
When updating a downstream application dependency from ADAM version 0.19.1-SNAPSHOT to ADAM Spark 2 release version 0.20.0, javac reports a compiler error:
[ERROR] adam-commands/src/main/java/c/g/h/a/commands/JavaCountAlignments.java:92: error: incompatible types: SparkContext cannot be converted to ADAMContext [ERROR] JavaADAMContext javaAdamContext = new JavaADAMContext(sc);
The fix is an explicit wrapping in ADAMContext first
ADAMContext ac = new ADAMContext(sc); JavaADAMContext javaAdamContext = new JavaADAMContext(ac);