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Implement joinVariantAnnotations with region join #1259

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heuermh opened this issue Nov 10, 2016 · 2 comments
Closed

Implement joinVariantAnnotations with region join #1259

heuermh opened this issue Nov 10, 2016 · 2 comments
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@heuermh
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@heuermh heuermh commented Nov 10, 2016

VariantContextRDD.joinVariantAnnotations should be implemented using a region join instead of a Spark core leftOuterJoin.

See comment https://github.com/bigdatagenomics/adam/pull/1250/files#r87030913

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@heuermh heuermh commented Dec 29, 2016

Note #1288 removes the join between Variant and VariantAnnotation altogether.

@heuermh heuermh modified the milestone: 0.21.0 Jan 4, 2017
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@heuermh heuermh commented Jan 5, 2017

WontFix due to #1288

@heuermh heuermh closed this Jan 5, 2017
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