Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Run Duplicate Marking on Fragments #1302

fnothaft opened this issue Dec 6, 2016 · 0 comments

Run Duplicate Marking on Fragments #1302

fnothaft opened this issue Dec 6, 2016 · 0 comments


Copy link

@fnothaft fnothaft commented Dec 6, 2016

The BDG-formats Fragment type is akin to the org.bdgenomics.adam.models.SingleReadBucket type, which is the core data structure in duplicate marking. If we have fragments, we should be able to run duplicate marking without the groupBy needed to make SingleReadBuckets.

@fnothaft fnothaft added the enhancement label Dec 6, 2016
@fnothaft fnothaft added this to the 0.21.1 milestone Dec 6, 2016
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
None yet
Linked pull requests

Successfully merging a pull request may close this issue.

None yet
1 participant
You can’t perform that action at this time.