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Run Duplicate Marking on Fragments #1302

fnothaft opened this Issue Dec 6, 2016 · 0 comments


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fnothaft commented Dec 6, 2016

The BDG-formats Fragment type is akin to the org.bdgenomics.adam.models.SingleReadBucket type, which is the core data structure in duplicate marking. If we have fragments, we should be able to run duplicate marking without the groupBy needed to make SingleReadBuckets.

@fnothaft fnothaft added the enhancement label Dec 6, 2016

@fnothaft fnothaft added this to the 0.21.1 milestone Dec 6, 2016

@heuermh heuermh closed this in #1309 Jan 19, 2017

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