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Pipe API formatters need to be public #1354

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heuermh opened this Issue Jan 18, 2017 · 0 comments

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heuermh commented Jan 18, 2017

Compile error in downstream project

https://github.com/heuermh/adam-snpeff/blob/master/src/main/scala/com/github/heuermh/adam/snpeff/AdamSnpEff.scala#L56

[INFO] Compiling 1 Scala source to /Users/heuermh/working/adam-snpeff/target/scala-2.10.5/classes...
[ERROR] /Users/heuermh/working/adam-snpeff/src/main/scala/com/github/heuermh/adam/snpeff/AdamSnpEff.scala:56: class VCFInFormatter in package variant cannot be accessed in package org.bdgenomics.adam.rdd.variant
[ERROR]     val output: VariantContextRDD = input.pipe[VariantContext, VariantContextRDD, VCFInFormatter](snpEffCommand)
[ERROR]                                                                                   ^
[ERROR] one error found
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
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