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ValidationStringency in MDTagging should apply to reads on unknown references #1365
Right now, if you have a read that is mapped to an unknown reference contig (not provided in reference build) when you are recomputing MD tags, it throws an exception. This makes sense, but we should be able to suppress these exceptions with ValidationStringency (i.e., if the read is mapped to a decoy contig), which is already passed in to MdTagging.