Join GitHub today
GitHub is home to over 50 million developers working together to host and review code, manage projects, and build software together.Sign up
Data missing when transfroming FASTQ to Adam #1393
I found some reads are lost when transforming FASTQ to Adam format. There are 500 reads in a FASTQ file, but only 435 reads are available in adam. I use adam flagstat to check the read count and get the following reads. After comparing the result, the last 65 reads are missing. I did use different input file to double check this issue and it happens for all of my testing data.