New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Estimate contig lengths in SequenceDictionary for BED, GFF3, GTF, and NarrowPeak feature formats #1410

heuermh opened this Issue Mar 1, 2017 · 0 comments


None yet
2 participants

heuermh commented Mar 1, 2017

For those feature formats that don't have a header we parse (currently BED, GFF3, GTF, NarrowPeak), we could do better than 1L for the contig lengths in the SequenceDictionary

How about max(f.getStart, f.getEnd) + 1L?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment