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Estimate contig lengths in SequenceDictionary for BED, GFF3, GTF, and NarrowPeak feature formats #1410

heuermh opened this issue Mar 1, 2017 · 0 comments


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@heuermh heuermh commented Mar 1, 2017

For those feature formats that don't have a header we parse (currently BED, GFF3, GTF, NarrowPeak), we could do better than 1L for the contig lengths in the SequenceDictionary

How about max(f.getStart, f.getEnd) + 1L?

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