Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

New primitives for adam-core #1454

Closed
devin-petersohn opened this issue Mar 22, 2017 · 3 comments
Closed

New primitives for adam-core #1454

devin-petersohn opened this issue Mar 22, 2017 · 3 comments
Assignees
Labels
Milestone

Comments

@devin-petersohn
Copy link
Member

@devin-petersohn devin-petersohn commented Mar 22, 2017

Here is a link to the list of primitives we would need in a Bedtools implementation:

http://bedtools.readthedocs.io/en/latest/content/overview.html#summary-of-available-tools

Which primitives would be useful in ADAM?

@heuermh
Copy link
Member

@heuermh heuermh commented Mar 31, 2017

Bedtools intersect, closest, and merge are those operations I use most frequently.

@devin-petersohn
Copy link
Member Author

@devin-petersohn devin-petersohn commented Apr 10, 2017

For now, we will add things to the layer above ADAM, and we will merge primitives into ADAM as we have them tested.

@heuermh
Copy link
Member

@heuermh heuermh commented Apr 10, 2017

Sounds reasonable.

@heuermh heuermh added this to the 0.23.0 milestone Dec 7, 2017
@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
Linked pull requests

Successfully merging a pull request may close this issue.

None yet
2 participants
You can’t perform that action at this time.