New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add quality score binner #1462

Closed
fnothaft opened this Issue Mar 31, 2017 · 0 comments

Comments

Projects
1 participant
@fnothaft
Member

fnothaft commented Mar 31, 2017

  • Should support lumping quality scores into a set number of bins.
  • We should characterize the impact of quality score binning on disk space.

@fnothaft fnothaft self-assigned this Mar 31, 2017

@fnothaft fnothaft added this to the 0.23.0 milestone Mar 31, 2017

@fnothaft fnothaft referenced this issue Apr 11, 2017

Merged

Add quality score binner #1485

3 of 3 tasks complete

fnothaft added a commit to fnothaft/adam that referenced this issue May 12, 2017

[ADAM-1462] Add quality score binner.
Resolves bigdatagenomics#1462. Adds an API for binning quality scores to `AlignmentRecordRDD`
and `FragmentRDD`. Exposes this on the `Transform` CLI.

heuermh added a commit that referenced this issue May 12, 2017

[ADAM-1462] Add quality score binner.
Resolves #1462. Adds an API for binning quality scores to `AlignmentRecordRDD`
and `FragmentRDD`. Exposes this on the `Transform` CLI.

@heuermh heuermh added this to Completed in Release 0.23.0 May 30, 2017

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment