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VCF line with `.` ALT gets dropped #1476

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fnothaft opened this Issue Apr 6, 2017 · 0 comments

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fnothaft commented Apr 6, 2017

Using this VCF, we drop:

20	1230237	.	T	.	47	PASS	NS=3;DP=13;AA=T	GT:GQ:DP:HQ	0|0:54:7:56,60	0|0:48:4:51,51	0/0:61:2

When using sc.loadVariants.

@fnothaft fnothaft added the bug label Apr 6, 2017

@fnothaft fnothaft added this to the 0.23.0 milestone Apr 6, 2017

fnothaft added a commit to fnothaft/adam that referenced this issue Apr 6, 2017

@heuermh heuermh closed this in #1477 Apr 7, 2017

@heuermh heuermh added this to Completed in Release 0.23.0 May 30, 2017

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