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Min Phred score gets bumped by 33 twice in BQSR #1488

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fnothaft opened this Issue Apr 13, 2017 · 0 comments

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fnothaft commented Apr 13, 2017

Paranoia sweeps the nation as an implicit conversion from Char to Int allows the minAcceptablePhred score to be incremented by 33 twice in the AlignmentRecordRDD->BaseQualityScoreRecalibration codepath. Troubled developers ask each other: could my Chars be the next target of implicit conversion? Find out more tonight.

For those watching at home, the first bump is here and the second bump is here.

@fnothaft fnothaft added the bug label Apr 13, 2017

@fnothaft fnothaft added this to the 0.23.0 milestone Apr 13, 2017

@fnothaft fnothaft self-assigned this Apr 13, 2017

fnothaft added a commit to fnothaft/adam that referenced this issue Apr 14, 2017

@heuermh heuermh added this to Completed in Release 0.23.0 May 30, 2017

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