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Where can I find "Phred-scaled quality score" (QUAL)? #1506
When reading VCF I cannot find "Phred-scaled quality score" (QUAL) and even htsjdkVC.getPhredScaledQual doesn't seem to be accessed anywhere.
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In the VCF specification, QUAL is defined
We use a split-allelic model, where each ALT at a site is a separate