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Save compressed single file VCF via HadoopBAM #1554

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heuermh opened this Issue May 31, 2017 · 0 comments

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heuermh commented May 31, 2017

See comment #1532 (comment)

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 16, 2017

[ADAM-1554] Support saving BGZF VCF output.
Resolves bigdatagenomics#1554. Additionally:

* Moves VCF file extension logic into ADAM, since Hadoop-BAM does not recognize
  .bgzf as a valid BGZF extension
* Refactored VCF output formats to remove need for ADAMHeaderlessVCFOutputFormat

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 17, 2017

[ADAM-1554] Support saving BGZF VCF output.
Resolves bigdatagenomics#1554. Additionally:

* Moves VCF file extension logic into ADAM, since Hadoop-BAM does not recognize
  .bgzf as a valid BGZF extension
* Refactored VCF output formats to remove need for ADAMHeaderlessVCFOutputFormat

heuermh added a commit that referenced this issue Jul 17, 2017

[ADAM-1554] Support saving BGZF VCF output.
Resolves #1554. Additionally:

* Moves VCF file extension logic into ADAM, since Hadoop-BAM does not recognize
  .bgzf as a valid BGZF extension
* Refactored VCF output formats to remove need for ADAMHeaderlessVCFOutputFormat

@heuermh heuermh modified the milestone: 0.23.0 Jul 22, 2017

@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018

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