Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Save compressed single file VCF via HadoopBAM #1554

Closed
heuermh opened this issue May 31, 2017 · 0 comments
Closed

Save compressed single file VCF via HadoopBAM #1554

heuermh opened this issue May 31, 2017 · 0 comments
Milestone

Comments

@heuermh
Copy link
Member

@heuermh heuermh commented May 31, 2017

See comment #1532 (comment)

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 16, 2017
Resolves bigdatagenomics#1554. Additionally:

* Moves VCF file extension logic into ADAM, since Hadoop-BAM does not recognize
  .bgzf as a valid BGZF extension
* Refactored VCF output formats to remove need for ADAMHeaderlessVCFOutputFormat
fnothaft added a commit to fnothaft/adam that referenced this issue Jul 17, 2017
Resolves bigdatagenomics#1554. Additionally:

* Moves VCF file extension logic into ADAM, since Hadoop-BAM does not recognize
  .bgzf as a valid BGZF extension
* Refactored VCF output formats to remove need for ADAMHeaderlessVCFOutputFormat
heuermh added a commit that referenced this issue Jul 17, 2017
Resolves #1554. Additionally:

* Moves VCF file extension logic into ADAM, since Hadoop-BAM does not recognize
  .bgzf as a valid BGZF extension
* Refactored VCF output formats to remove need for ADAMHeaderlessVCFOutputFormat
@heuermh heuermh modified the milestone: 0.23.0 Jul 22, 2017
@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
Linked pull requests

Successfully merging a pull request may close this issue.

None yet
1 participant
You can’t perform that action at this time.