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VCF header read from stream ignored in VCFOutFormatter #1564

heuermh opened this Issue Jun 9, 2017 · 0 comments


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heuermh commented Jun 9, 2017

VCFOutFormatter.scala#L59 reads the VCF header from the stream and ignores it.

It should merge the header with headerLines specified in the ctr as ADAMContext.scala#L1142 does.

fnothaft added a commit that referenced this issue Jun 14, 2017

[ADAM-1564] Read VCF header from stream in VCFOutFormatter. (#1565)
Read VCF header from stream in VCFOutFormatter. Resolves #1564.

@heuermh heuermh modified the milestone: 0.23.0 Jul 22, 2017

@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018

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