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Add unit test coverage for BED12 parser and writer #1579

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fnothaft opened this Issue Jun 22, 2017 · 0 comments

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fnothaft commented Jun 22, 2017

Related to #1418 and #1405. The BED6 codepath is well covered, but BED12 is not covered on either the read and write path.

@fnothaft fnothaft added the bug label Jun 22, 2017

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 4, 2017

[ADAM-1579] Add unit test coverage for BED12 format.
Resolves bigdatagenomics#1579. Found small bugs that would lead to last 6 fields not getting
written if the thickStart field wasn't written. Also, identified a bug where the
strand would be set to unknown if an independent strand was provided.

@heuermh heuermh closed this in #1587 Jul 5, 2017

heuermh added a commit that referenced this issue Jul 5, 2017

[ADAM-1579] Add unit test coverage for BED12 format.
Resolves #1579. Found small bugs that would lead to last 6 fields not getting
written if the thickStart field wasn't written. Also, identified a bug where the
strand would be set to unknown if an independent strand was provided.

@heuermh heuermh modified the milestone: 0.23.0 Jul 22, 2017

@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018

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