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Expose pipe API from Python/R #1611

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fnothaft opened this Issue Jul 19, 2017 · 0 comments

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fnothaft commented Jul 19, 2017

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@fnothaft fnothaft added this to the 0.23.0 milestone Jul 19, 2017

@fnothaft fnothaft self-assigned this Jul 19, 2017

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 21, 2017

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 21, 2017

[ADAM-1611] Extend pipe APIs to Java, Python, and R.
Resolves bigdatagenomics#1611. Adds a Java-friendly pipe method onto `GenomicRDD`, and
conversion functions in the `org.bdgenomics.adam.api.java` package.
Simultaneously, we add a `GenomicRDD` base type in the R bindings. With
these additions, we then add the pipe method to the `GenomicRDD` class
that exists in both Python and R. The language bindings use reflection
to construct the in/out-formatters and conversion functions.

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 21, 2017

[ADAM-1611] Extend pipe APIs to Java, Python, and R.
Resolves bigdatagenomics#1611. Adds a Java-friendly pipe method onto `GenomicRDD`, and
conversion functions in the `org.bdgenomics.adam.api.java` package.
Simultaneously, we add a `GenomicRDD` base type in the R bindings. With
these additions, we then add the pipe method to the `GenomicRDD` class
that exists in both Python and R. The language bindings use reflection
to construct the in/out-formatters and conversion functions.

heuermh added a commit that referenced this issue Jul 21, 2017

[ADAM-1611] Extend pipe APIs to Java, Python, and R.
Resolves #1611. Adds a Java-friendly pipe method onto `GenomicRDD`, and
conversion functions in the `org.bdgenomics.adam.api.java` package.
Simultaneously, we add a `GenomicRDD` base type in the R bindings. With
these additions, we then add the pipe method to the `GenomicRDD` class
that exists in both Python and R. The language bindings use reflection
to construct the in/out-formatters and conversion functions.

@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018

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