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Shuffle region join throws multimapped exception for unmapped reads #1679

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fnothaft opened this issue Aug 23, 2017 · 0 comments
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Shuffle region join throws multimapped exception for unmapped reads #1679

fnothaft opened this issue Aug 23, 2017 · 0 comments
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@fnothaft fnothaft commented Aug 23, 2017

If you have an unmapped read, you get the (confusing) exception:

java.lang.IllegalArgumentException: requirement failed: Cannot sort RDD containing a multimapped element. 
@fnothaft fnothaft added this to the 0.23.0 milestone Aug 23, 2017
@fnothaft fnothaft self-assigned this Aug 23, 2017
fnothaft added a commit to fnothaft/adam that referenced this issue Aug 27, 2017
heuermh added a commit that referenced this issue Aug 28, 2017
@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018
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