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Exception thrown in VariantContextConverter.formatAllelicDepth despite SILENT validation stringency #1695
Unfortunately until the genotype refactor in bdg-formats is complete, the handling for VCF INFO fields and VCF FORMAT fields is slightly different.
Read depth (AD) is Number=R Type=Integer VCF INFO field
Allelic Depth (AD) is a Number=R Type=Integer VCF FORMAT field
There is no check here that the array in HtsjdkVariantContext is the correct length, so we get the