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vcf2adam support #1731

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skprasadu opened this issue Sep 17, 2017 · 2 comments
Closed

vcf2adam support #1731

skprasadu opened this issue Sep 17, 2017 · 2 comments
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@skprasadu
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@skprasadu skprasadu commented Sep 17, 2017

Team,

I am trying the exercise from @ https://aws.amazon.com/blogs/big-data/interactive-analysis-of-genomic-datasets-using-amazon-athena/ and when I am trying to convert from vcf2adam to convert to Parquet format. It is exiting telling vcf2adam is not supported only fasta2adam is supported. Can someone help?

Krishna

@fnothaft
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@fnothaft fnothaft commented Sep 17, 2017

Hi @skprasadu! We split the vcf2adam command into two commands: transformGenotypes and transformVariants

@fnothaft
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@fnothaft fnothaft commented Oct 8, 2017

I believe this issue is resolved; please reopen if you need any help. Thanks!

@fnothaft fnothaft closed this Oct 8, 2017
@heuermh heuermh added this to the 0.23.0 milestone Dec 7, 2017
@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018
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