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command failure after build success #1744

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Rokshan2016 opened this issue Sep 25, 2017 · 1 comment
Closed

command failure after build success #1744

Rokshan2016 opened this issue Sep 25, 2017 · 1 comment
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@Rokshan2016
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@Rokshan2016 Rokshan2016 commented Sep 25, 2017

Hi,
I have successfully build Adam . But after running the following command I am having this error:

Command: ./adam-submit transformAlignments hdfs://ip-10-48-3-5.ips.local:8020/user/rokshan.jahan/data1/SRR1517848.fastq hdfs://ip-10-48-3-5.ips.local:8020/user/rokshan.jahan/SRR1517848.adam -force_load_fastq

Error:
17/09/25 00:39:00 INFO cli.ADAMMain: ADAM invoked with args: "transformAlignments" "hdfs://ip-10-48-3-5.ips.local:8020/user/rokshan.jahan/data1/SRR1517848.fastq" "hdfs://ip-10-48-3-5.ips.local:8020/user/rokshan.jahan/SRR1517848.adam" "-force_load_fastq"
Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/parquet/hadoop/metadata/CompressionCodecName
at org.bdgenomics.utils.cli.ParquetArgs$class.$init$(ParquetArgs.scala:40)
at org.bdgenomics.adam.cli.InitArgs.(ADAMMain.scala:71)
at sun.reflect.N

@fnothaft fnothaft added the duplicate label Sep 25, 2017
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@fnothaft fnothaft commented Sep 25, 2017

Hi @Rokshan2016! This issue is being discussed on #1742. Please follow the discussion on that ticket. Thanks!

@fnothaft fnothaft closed this Sep 25, 2017
@heuermh heuermh added this to the 0.23.0 milestone Dec 7, 2017
@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018
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