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Fragment Issue #1752

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Rokshan2016 opened this issue Oct 3, 2017 · 1 comment
Closed

Fragment Issue #1752

Rokshan2016 opened this issue Oct 3, 2017 · 1 comment
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@Rokshan2016
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@Rokshan2016 Rokshan2016 commented Oct 3, 2017

How can I create an unaligned adam records into fragment records?

@heuermh
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@heuermh heuermh commented Oct 3, 2017

val alignments = sc.loadAlignments("...")
val fragments = alignments.toFragments()

See http://bdgenomics.org/adam/latest/scaladocs/index.html#org.bdgenomics.adam.rdd.read.AlignmentRecordRDD

@heuermh heuermh closed this Oct 3, 2017
@heuermh heuermh added this to the 0.23.0 milestone Dec 7, 2017
@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018
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