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Reinstantiation of SQLContext in pyadam ADAMContext #1774

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akmorrow13 opened this issue Oct 24, 2017 · 1 comment
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Reinstantiation of SQLContext in pyadam ADAMContext #1774

akmorrow13 opened this issue Oct 24, 2017 · 1 comment
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@akmorrow13
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@akmorrow13 akmorrow13 commented Oct 24, 2017

Creating an ADAMContext in pyadam generates the error
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database metastore_db.

The following creates this error (with Spark 2.1.1, scala 2.11):

from bdgenomics.adam.adamContext import ADAMContext
ac = ADAMContext(sc)
reads = ac.loadAlignments("mouse_chrM.bam”)
reads.toDF().rdd.count()
@heuermh
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@heuermh heuermh commented Oct 24, 2017

Closing as duplicate of #1666.

@heuermh heuermh closed this Oct 24, 2017
@heuermh heuermh added this to the 0.23.0 milestone Dec 7, 2017
@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018
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