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Cannot find `` in bioconda build #1862

heuermh opened this Issue Jan 5, 2018 · 2 comments


2 participants

heuermh commented Jan 5, 2018

@fnothaft might need help debugging this one. The bioconda install splits the bin and package directories.

I thought the patches should no longer be necessary, because we rolled in the # Find original directory of this script, resovling symlinks block somewhere, but perhaps I am mistaken?


+ /bin/bash -x -e /opt/conda/conda-bld/adam_1515176451401/test_tmp/
+ adam-submit --help
line 54: /opt/conda/conda-bld/adam_1515176451401/_t_env/bin/
No such file or directory

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fnothaft commented Jan 5, 2018

I would patch so that you've got set -x -v in all the scripts and see how far you can get.

@heuermh heuermh added this to the 0.24.0 milestone Jan 6, 2018

@heuermh heuermh self-assigned this Jan 6, 2018


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heuermh commented Jan 6, 2018

Looks like we still need those # Find original directory of this script blocks, at least for the bioconda recipe.

@heuermh heuermh closed this Jan 6, 2018

@heuermh heuermh added this to Completed in Release 0.24.0 Jan 9, 2018

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