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InputStream passed to VCFHeaderReader does not get closed #1900

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fnothaft opened this Issue Feb 3, 2018 · 0 comments

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fnothaft commented Feb 3, 2018

See https://github.com/bigdatagenomics/adam/blob/master/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala#L1153. This causes connection pool exhaustion when reading a large number of VCFs directly from S3.

@fnothaft fnothaft added the bug label Feb 3, 2018

@fnothaft fnothaft added this to the 0.24.0 milestone Feb 3, 2018

@fnothaft fnothaft self-assigned this Feb 3, 2018

fnothaft added a commit to fnothaft/adam that referenced this issue Feb 3, 2018

@heuermh heuermh closed this in #1901 Feb 3, 2018

heuermh added a commit that referenced this issue Feb 3, 2018

@heuermh heuermh added this to Completed in Release 0.24.0 Feb 10, 2018

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