Phred values from 156–254 do not round trip properly between log space #1964
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fnothaft
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Mar 23, 2018
Resolves bigdatagenomics#1964. There was an underflow somewhere causing round trip from log space values to Phred to mismatch for values between 164 and 254. This change lowers the point where we switch from using the precomputed table to where we use the log math. Also, we add a unit test checking round trip values using PhredUtils.
fnothaft
pushed a commit
to fnothaft/adam
that referenced
this issue
Mar 23, 2018
Resolves bigdatagenomics#1964. There was an underflow somewhere causing round trip from log space values to Phred to mismatch for values between 164 and 254. This change lowers the point where we switch from using the precomputed table to where we use the log math. Also, we add a unit test checking round trip values using PhredUtils.
fnothaft
pushed a commit
to fnothaft/adam
that referenced
this issue
Mar 23, 2018
Resolves bigdatagenomics#1964. There was an underflow somewhere causing round trip from log space values to Phred to mismatch for values between 164 and 254. This change lowers the point where we switch from using the precomputed table to where we use the log math. Also, we add a unit test checking round trip values using PhredUtils.
heuermh
added a commit
that referenced
this issue
Mar 23, 2018
Resolves #1964. There was an underflow somewhere causing round trip from log space values to Phred to mismatch for values between 164 and 254. This change lowers the point where we switch from using the precomputed table to where we use the log math. Also, we add a unit test checking round trip values using PhredUtils.
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