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Error: File name too long when building on encrypted file system #2031

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heuermh opened this Issue Aug 27, 2018 · 1 comment

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heuermh commented Aug 27, 2018

$ mvn install
...
[ERROR] adam/adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala:2099: error: File name too long
[ERROR] This can happen on some encrypted or legacy file systems.  Please see SI-3623 for more details.
[ERROR]                   .map(c => {
[ERROR]                          ^
[ERROR] adam/adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala:2101: error: File name too long
[ERROR] This can happen on some encrypted or legacy file systems.  Please see SI-3623 for more details.
[ERROR]                       "Expected character field: %s in %s.".format(id,
[ERROR]                                                                   ^
...
[ERROR] 24 errors found

See https://issues.scala-lang.org/browse/SI-3623, spark-notebook/spark-notebook#899

@heuermh heuermh added this to the 0.24.1 milestone Sep 20, 2018

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heuermh commented Sep 20, 2018

Closing as not an issue with ADAM itself.

@heuermh heuermh closed this Sep 20, 2018

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