New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Building from adam-core module directory fails to generate Scala code for sql package #2047

Closed
heuermh opened this Issue Sep 11, 2018 · 0 comments

Comments

Projects
None yet
1 participant
@heuermh
Copy link
Member

heuermh commented Sep 11, 2018

adam-core master
$ mvn clean compile
...
[INFO]
[INFO] --- build-helper-maven-plugin:1.12:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: adam/adam-core/src/main/scala added.
[INFO] Source directory: adam/adam-core/target/generated-sources/src/main/scala added.
[INFO]
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
[INFO]
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
[INFO]
...
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
...
[ERROR] adam/adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala:42: error: object Variant is not a member of package org.bdgenomics.adam.sql
[ERROR] import org.bdgenomics.adam.sql.{ Variant => VariantProduct }
[ERROR]        ^
...

adam-core master
$ cd ..

adam master
$ mvn clean compile
...
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment