Remove all the commands in the "CONVERSION OPERATIONS" `CommandGroup` #373

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laserson opened this Issue Sep 10, 2014 · 4 comments

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laserson commented Sep 10, 2014

If we are supporting a transform command, shouldn't it cover all of these cases?

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fnothaft Sep 20, 2014

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Sorry for accidentally closing this; I closed the wrong issue! 👎

In any case, the transform command really only touches reads. The remaining formats don't have transforms, hence the use of the conversion operations.

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fnothaft commented Sep 20, 2014

Sorry for accidentally closing this; I closed the wrong issue! 👎

In any case, the transform command really only touches reads. The remaining formats don't have transforms, hence the use of the conversion operations.

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heuermh Mar 24, 2016

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@laserson ok to close this issue as WontFix?

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heuermh commented Mar 24, 2016

@laserson ok to close this issue as WontFix?

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laserson Apr 1, 2016

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I'm still not crazy about the naming. If I understand correctly, transform is actually used for performing the GATK operations, is that right?

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laserson commented Apr 1, 2016

I'm still not crazy about the naming. If I understand correctly, transform is actually used for performing the GATK operations, is that right?

@fnothaft fnothaft added the wontfix label Jul 20, 2016

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fnothaft Jul 20, 2016

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Closing as won't fix.

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fnothaft commented Jul 20, 2016

Closing as won't fix.

@fnothaft fnothaft closed this Jul 20, 2016

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