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Handle no-ops more intelligently when creating MD tags #392
Sure, I can share; it's just from the SMaSH Venter reads.
Here's the original read:
It aligns to chr22, 42898574 (if 0-indexed), in the reverse direction. Here's the cigar string & MD tag I get from Adam:
It looks like there's an indel at the beginning of the read:
Maybe that's what is causing the hiccup? I realize this MD tag is different from the one I posted... maybe the code changed in between me getting the above result (about a week ago) and now?