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Original qualities are parsed out, but left in attribute fields #483
Not sure whether to call this a bug or not... When we convert from BAM, we parse the original qualities field out into the ADAM format, but we don't remove this from the attributes tag string. I have a suspicion that we do the same thing for all tags (e.g., OP, OC, MD)... For files with OC for example, this leads to a 25% penalty in size on disk.