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Support loading multiple indexed read files #787
@fnothaft quick question about this and whether or not I should make a new issue: would this allow me to supply a tumor bam file and a normal bam file (seperate files) into avocado? One really nice thing you can do with GATK that I would really want here as a minor addition, is to pass a user supplied tag associated with the multiple input files that get appended to the reads. For example in GATK (and mutect) you can do this, which allows for my desired usage pattern:
So you can see the same tags could be given to multiple files. Mutect treats the entire pool of files labeled
It would be super lame if we had to first combine all bam files into a single file to do that analysis.
Anyhow let me know if I should make the labeling thing above a separate issue, or if that is ok to be appended to this issue?