New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

R language package for Adam #882

Closed
chanwit opened this Issue Nov 12, 2015 · 2 comments

Comments

Projects
3 participants
@chanwit

chanwit commented Nov 12, 2015

Hi,

I've successfully created a simple R package AdamR similar to SparkR in the Spark project.
It's been working greatly enough for me to do countKmers and turn its result into a local R dataset.

How could I contribute this package? Does it fit into this project?

@heuermh

This comment has been minimized.

Show comment
Hide comment
@heuermh

heuermh Nov 12, 2015

Member

Very cool!

Easiest would be a pull request against this repo and then everyone could evaluate where it best fits.

If you would like to contribute to bigdatagenomics repositories, and haven't yet, you may want to fill out a contributor license agreement.

Member

heuermh commented Nov 12, 2015

Very cool!

Easiest would be a pull request against this repo and then everyone could evaluate where it best fits.

If you would like to contribute to bigdatagenomics repositories, and haven't yet, you may want to fill out a contributor license agreement.

@fnothaft

This comment has been minimized.

Show comment
Hide comment
@fnothaft

fnothaft Jan 12, 2016

Member

Just pinged @chanwit; he's working on licensing with his institution. We'll watch this ticket!

Member

fnothaft commented Jan 12, 2016

Just pinged @chanwit; he's working on licensing with his institution. We'll watch this ticket!

@fnothaft fnothaft referenced this issue Feb 21, 2017

Merged

[ADAM-882] R API #1397

3 of 3 tasks complete

@fnothaft fnothaft added this to the 0.23.0 milestone Mar 3, 2017

@heuermh heuermh added this to Triage in Release 0.23.0 Mar 8, 2017

fnothaft added a commit to fnothaft/adam that referenced this issue Jun 26, 2017

[ADAM-882] Add R API.
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.

fnothaft added a commit to fnothaft/adam that referenced this issue Jun 26, 2017

[ADAM-882] Add R API.
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.

fnothaft added a commit to fnothaft/adam that referenced this issue Jun 27, 2017

[ADAM-882] Add R API.
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 11, 2017

[ADAM-882] Add R API.
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 19, 2017

[ADAM-882] Add R API.
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 21, 2017

[ADAM-882] Add R API.
Resolves bigdatagenomics#882. Adds an R API that binds around the ADAM GenomicRDD APIs.
Supports Spark 2.x and onwards, as accessible SparkR functionality for binding
to Java libraries was added in Spark 2.0.0.

@heuermh heuermh closed this in 640c44b Jul 21, 2017

@heuermh heuermh moved this from Triage to Completed in Release 0.23.0 Jan 4, 2018

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment